PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00637.1.g00040.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 487aa    MW: 51567.2 Da    PI: 6.1862
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00637.1.g00040.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.92.7e-135389340
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                                  i ++ +r  t+s+R++g  KKAeELS+LC+++va++  
  Zpz_sc00637.1.g00040.1.am.mk 53 IASQKKRAATLSRRLEGFKKKAEELSILCGVRVAIV-C 89
                                  8899******************************76.3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.184388IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-943102IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-1543116IPR002100Transcription factor, MADS-box
CDDcd002664.03E-1945104No hitNo description
PfamPF003193.7E-125389IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MSSAASLLYI RSRHPPRRPA RACGGTFRFA SVESSRRARA GTMPRRKIPM ELIASQKKRA  60
ATLSRRLEGF KKKAEELSIL CGVRVAIVCG TDGAAPPVVW ESEEGVLNAY RALPDAARAA  120
HTFRAYADAE LGKEAAKLAR VRQGGPAALS CWDKALEGLD AEEARRVLED VDAAIAAAED  180
RRVALGLPAL LDDSGGLFDG VAPLSHAVLT FGGGNFVDVE ESALGAQGLG GGDANGGRYE  240
QAVWTNDVRA AAMQPSYGFH QYPAGGGGAN MDGYQLQMAA GMNGYQRQMA ADLNGYQRQM  300
AADLNGYQLQ MAADLNGYSD NNDTRIISWD GIQPCSGGLP HLGYASQCYG GMSGYRTQHV  360
SSTGGRQPNL YNAVVPAGYP SFDIGHGYID TPVGNNAQSY AGNFVNAPPA LSHTMGTGDN  420
FSNAAPAQSP AVYHGGELIN GSSYTTQQPA AQQQIQSATS SQQSLSGIEQ LHYFSDVDDA  480
QLQFWGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.32e-08M-type_MADS family protein